s
Omnicrobe

Release Notes


Current release

Omnicrobe 1.1 (current release)

Information about the data
Versions and number of relationships per source
PubMed GenBank DSMZ CIRM-BIA CIRM-CFBP CIRM-Levures
Version 2022-10-07 2022-10-26 2022-10-26 2022-09-30 2022-10-07 2021-10-14
Taxa - Habitat relations 731,066 266,417 50,499 669 1,337 941
Taxa - Phenotype relations 51,216 - - - - -
Taxa - Use relations 17,225 - - - - -
New features and improvements in this release
  • improved extraction quality
  • fixed bugs
  • updated taxonomy


Previous releases

Omnicrobe 1.0

Information about the data
Versions and number of relationships per source
PubMed GenBank DSMZ CIRM-BIA CIRM-CFBP CIRM-Levures
Version 2022-04-10 2022-04-22 2018-01-26 2021-03-07 2022-03-08 2021-08-23
Taxa - Habitat relations 721,244 259,745 35,696 604 1,109 943
Taxa - Phenotype relations 50,410 - - - - -
Taxa - Use relations 16,007 - - - - -
New features and improvements in this release
  • improved extraction quality
  • fixed bugs
  • updated taxonomy
  • updated OntoBiotope


Omnicrobe 0.2

Information about the data
Versions and number of relationships per source
PubMed GenBank DSMZ CIRM-BIA CIRM-CFBP CIRM-Levures
Version 2021-08-11 2021-09-20 2018-01-26 2021-07-20 2020-09-22 2021-08-23
Taxa - Habitat relations 683,016 255,855 15,865 580 897 966
Taxa - Phenotype relations 53,996 - - - - -
Taxa - Use relations 14,620 - - - - -
New features and improvements in this release


Omnicrobe 0.1

Information about the data
Versions and number of relationships per source
PubMed GenBank DSMZ CIRM-BIA CIRM-CFBP CIRM-Levures
Version 2021-08-11 2021-09-20 2018-01-26 2021-07-20 2020-09-22 2021-08-23
Taxa - Habitat relations 681,806 256,081 35,799 510 184 964
Taxa - Phenotype relations 53,156 - - - - -
Taxa - Use relations 14,381 - - - - -
New features and improvements in this release
  • Adding CIRM-CFBP data